Tuesday, June 21, 2011

Genotype vs. Gene Mutation

Fortunately, most of the readers that can be found commenting on these blogs are much smarter than I am. A couple of weeks back I posted a blog answering a momma's questions about gene mutations and the severity of the disease linked to them which can be found here. A very intelligent reader by the name of Jessica left me a very well written comment that may have straightened out some of the points in my blog even better than I could. Thank you Jessica for taking the time to respond to the blog with such a thoughtful and educated comment. We learn something new every day, I know I did:

There are actually six classes of mutations, and they don't directly range from 1-6 in "severity". Also, they don't indicate severity so much as the manner in which the CFTR protein and/or transport is faulty - a cellular issue that has not been proven to be affected by patient behaviors. There's a lot of great information with more detail and specifics in this article on the CFF website.

Taking care of yourself - treatments, exercise, nutrition, etc, are all still extremely important to put yourself in the best position for optimum health, but none currently available have any direct impact on the cellular-level mutation problem itself - that's exactly where these new treatments come in and why they're so exciting!

Lastly, a quick but important distinction: DeltaF508 is the most commonly identified mutation, but *double* DeltaF508 is a genotype, *not* a mutation. Everyone has two mutations, which are often not the same; the genotype identifies the pair, and their interaction with one another (which is arguably equally if not more important than the mutations individually). DF508 is the most *commonly identified*mutation, but DDF508 is not necessarily the most common *genotype*, and if it is, it's by a slim margin - it's not like there is a vast majority of double deltas and other genotypes are sort of "odd type out" in CF statistics.

Also, while that DF508 is the most commonly *identified* mutation , many scientists argue that may just as well be because it was the *first* identified mutation, and as more mutations are identified AND more individuals learn their genotype, that will likely change, as it doesn't make sense that DF508 would be the most common from an evolutionary biology standpoint.

The most important reason to know your (or your child's) genotype is because the new wave of treatments are all going to be rather class specific, if not mutation specific - knowing BOTH of your mutations lets you know whether new trials apply to you (so you can participate and get them to market quicker!) and if they don't, whether the science might be in the same wheelhouse and therefore might eventually - or at least more quickly than a treatment targeting a mutation in a completely different class.

Hope that helps clarify some things!

Comments (9)

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Glad I could help - I guess being a science dork comes in handy sometimes after all :o)
1 reply · active less than 1 minute ago
Your stupidity begins where my knowledge ends :)
Jessica, your reply to Ronnie's post earlier was spot-on with what my doctor said last Friday at clinic. That got me wondering if you were a CF doctor, are you? And if not, WOW I'm surprised how much you know about the subject, kudos! :)
1 reply · active less than 1 minute ago
She's actually a cyster...and a science nerd :)
jody klarkowski's avatar

jody klarkowski · 719 weeks ago

So I guess I am confused....If my son has two copies of the DF508 mutation then that is his genotype? Genotype is whatever the two mutuations make up?
1 reply · active less than 1 minute ago
Yes, your genotype for Cystic Fibrosis is the combination of mutations that give you CF. Some people, though very very rare, actually have more than 2 CF mutations.
Another science nerd here. Now if we're going to be particular, the new correct nomenclature for the ∆F508 mutation is actually now F508del, to match the other deletion mutations.
I think you mean phenotype, not genotype, Ronnie :)
1 reply · active less than 1 minute ago
I was making the distinction between genotype and gene mutation as well.

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